BiotiQuest® Gut Health & Probiotics Blog with Martha Carlin

Probiotics in Winter: Why Your Gut Needs Extra Support

Martha Carlin | Dec 15, 2025 |

Winter has a way of narrowing our world.

The days shorten. We move indoors. Our food choices shift, often toward comfort rather than diversity. And quietly, almost invisibly, the ecosystem living inside us responds to these changes.

I’ve come to see winter not as a season to “fight,” but as a season to fortify. Especially when it comes to the gut.

Because while winter may feel like a pause in nature, your microbiome is anything but dormant.

Winter Stress Happens on the Inside, Too

We often talk about winter in terms of immune challenges, but the deeper story starts in the gut.

Less sunlight can affect circadian rhythms and mood. Travel, holidays, and disrupted routines increase stress hormones. Cold weather alters blood flow to the digestive tract. And many of us eat fewer fresh, fiber-rich foods—the very compounds our microbes rely on to thrive.

From a systems perspective, this creates a perfect storm:

  • Reduced microbial diversity
  • Slower digestion and gut motility
  • Increased intestinal permeability
  • A more reactive immune system

When the gut ecosystem becomes strained, the body must work harder to maintain balance. That effort shows up as fatigue, sugar cravings, disrupted sleep, lowered resilience, or feeling like it takes longer to “bounce back.”

This isn’t a failure of the body. It’s a signal.

The Gut Is an Immune Organ First

Roughly 70% of the immune system is associated with the gut. That means immune resilience isn’t something that magically turns on when winter arrives—it’s built day by day, through the health of the intestinal terrain.

A well-supported microbiome helps:

  • Train immune cells to respond appropriately
  • Produce short-chain fatty acids that strengthen the gut lining
  • Crowd out opportunistic microbes
  • Modulate inflammation rather than amplify it

In winter, when external challenges increase and internal resources may be lower, the gut often needs more support, not less.

Why Probiotics Matter More in Winter

I think of probiotics not as a quick fix, but as ecological allies.

Targeted probiotic strains can help replenish functions that tend to decline in winter—such as butyrate production, microbial signaling, and metabolic flexibility. They can also support recovery after antibiotics, holiday indulgences, or periods of stress when the microbiome takes a hit.

But not all probiotics are created equal.

What matters isn’t just adding bacteria—it’s restoring function. That’s why I’m so focused on guild-based formulations: strains selected to work together, sharing metabolic tasks and supporting one another over time. Nature doesn’t operate in isolation, and neither should probiotics.

Think “Seasonal Support,” Not Year-Round Uniformity

Traditional cultures have always adjusted food and fermentation practices with the seasons. Winter was often a time for slower ferments, deeper nourishment, and microbial preservation.

In our modern world, probiotics can help bridge that seasonal gap—especially when fresh diversity is harder to come by.

This might look like:

  • Supporting immune balance during cold and flu season
  • Nurturing the gut-brain connection when stress is higher
  • Reinforcing the gut lining when digestion feels sluggish
  • Helping maintain metabolic steadiness when routines shift

None of this is about overriding the body. It’s about listening and responding thoughtfully.

A Gentle Invitation

If winter has you feeling a bit more fragile, a bit less resilient, I invite you to consider what’s happening at the microbial level.

Ask yourself:

  • Am I feeding my inner ecosystem as well as I’m feeding myself?
  • Does my gut have the tools it needs to adapt to this season?
  • What would it look like to support my body before something feels off?

As always, these are conversations worth having with a trusted health professional—especially one who appreciates the interconnected intelligence of the body.

Winter isn’t something to endure. It’s a season to build quiet strength from the inside out. And the gut, as it turns out, is a very good place to start.

With gratitude,

Martha Carlin photo Martha Carlin, is a “Citizen Scientist”, systems thinker, wife of Parkinson’s warrior, John Carlin, and founder of The BioCollective , a microbiome company expanding the reach of science and BiotiQuest, the first of it’s kind probiotic line. Since John’s diagnosis in 2002, Martha began learning the science of agriculture, nutrition, environment, infectious disease, Parkinson’s pathology and much more. In 2014, when the first research was published showing a connection between the gut bacteria and the two phenotypes of Parkinson’s, Martha quit her former career as a business turnaround expert and founded The BioCollective to accelerate the discovery of the impact of gut health on all human disease. Martha was a speaker at the White House 2016 Microbiome Initiative launch, challenging the scientific community to “think in a broader context”. Her systems thinking background and experience has led to collaborations across the scientific spectrum from neuroscience to engineering to infectious disease. She is a respected out of the box problem solver in the microbiome field and brings a unique perspective to helping others understand the connections from the soil to the food to our guts and our brains.

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